PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g025500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 689aa    MW: 75070.2 Da    PI: 5.4512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g025500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12513558454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Sopen08g025500.1 513 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 558
                       799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5696279IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39509558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18512581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-15512563No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18513580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10513558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16515564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTEYSLPTMN LWNNSTSDDN VSMMEAFMSS DLSFWATNTT NSTSAAVVGV NSNLPHTNNN  60
TPSVFAPSSS TSASTLSAAA TVDASKSMPF FNQETLQQRL QALIDGARET WTYAIFWQSS  120
VVDFSSPSVL GWGDGYYKGE EDKAKRKLSV SSPAYIAEQE HRKKVLRELN SLISGAPPGT  180
DDAVDEEVTD TEWFFLISMT QSFVNGSGLP GQALYSSSPI WVAGTEKLAA SHCERVRQAQ  240
GFGLQTIVCI PSANGVVELG STELIVQSSD LMNKVRVLFN FSNDLGSGSW AVQPESDPSA  300
LWLTDPSSSG MEVRESLNTV QTNSVPSSNS NKQIAYGNEN NHPSGNGQSC YNQKNPPQQQ  360
TQGFFTRELN FSEFGFDGSS NRNGNSSVSC KPESGEILNF GDSTKKSASS ANVNLFTGQS  420
QFGAGEENIN NKNKKRSATS RGSNEEGMLS FVSGTILPSS GMKSGGGGGE DSEHSDLEAS  480
VVKEADSSRV VEPEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS  540
KMDKASLLGD AISYINELKS KLQNTESDKE DLKSQIEDLK KESRRPGPPP PPNQDLKMSS  600
HTGGKIVDVD IDVKIIGWDA MIRIQCNKKN HPAARLMAAL MELDLDVHHA SVSVVNDLMI  660
QQATVKMGSR HYTEEQLRVA LTSKIAETH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-71892812194Transcription factor MYC3
4rqw_B3e-71892812194Transcription factor MYC3
4rs9_A3e-71892812194Transcription factor MYC3
4yz6_A3e-71892812194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494502KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085364.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLK4CN530.0K4CN53_SOLLC; Uncharacterized protein
STRINGSolyc08g076930.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-174bHLH family protein